BMIPhreeqcRM Member List

This is the complete list of members for BMIPhreeqcRM, including all inherited members.

_Index	StaticIndexer< PhreeqcRM >	protected
_Instances	StaticIndexer< PhreeqcRM >	protectedstatic
_InstancesIndex	StaticIndexer< PhreeqcRM >	protectedstatic
_InstancesLock	StaticIndexer< PhreeqcRM >	protectedstatic
AddOutputVars(std::string option, std::string def) override	BMIPhreeqcRM	virtual
BMIPhreeqcRM()	BMIPhreeqcRM
BMIPhreeqcRM(int ngrid, int nthreads)	BMIPhreeqcRM
Char2TrimString(const char *str, size_t l=0)	PhreeqcRM	static
CleanupBMIModuleInstances(void)	BMIPhreeqcRM	static
CleanupReactionModuleInstances(void)	PhreeqcRM	static
CloseFiles(void)	PhreeqcRM
Concentrations2Utility(const std::vector< double > &c, const std::vector< double > &tc, const std::vector< double > &p_atm)	PhreeqcRM
Construct(Initializer initializer) override	BMIPhreeqcRM	protected
CreateBMIModule()	BMIPhreeqcRM	static
CreateBMIModule(int nxyz, int nthreads)	BMIPhreeqcRM	static
CreateMapping(const std::vector< int > &grid2chem)	PhreeqcRM
CreateReactionModule(int nxyz, int nthreads)	PhreeqcRM	static
DecodeError(int result)	PhreeqcRM
Destroy(int id)	StaticIndexer< PhreeqcRM >	inlinestatic
DestroyAll()	StaticIndexer< PhreeqcRM >	inlinestatic
DestroyBMIModule(int n)	BMIPhreeqcRM	static
DestroyReactionModule(int n)	PhreeqcRM	static
DumpModule(bool dump_on, bool append=false)	PhreeqcRM
ErrorHandler(int result, const std::string &e_string)	PhreeqcRM
ErrorMessage(const std::string &error_string, bool prepend=true)	PhreeqcRM
FileExists(const std::string &name)	PhreeqcRM	static
FileRename(const std::string &temp_name, const std::string &name, const std::string &backup_name)	PhreeqcRM	static
Finalize() override	BMIPhreeqcRM
FindComponents()	PhreeqcRM
GetBackwardMapping(void)	PhreeqcRM	inline
GetChemistryCellCount(void) const	PhreeqcRM	inline
GetComponentCount(void) const	PhreeqcRM	inline
GetComponentName() override	BMIPhreeqcRM	inline
GetComponents(void) const	PhreeqcRM	inline
GetConcentrations(std::vector< double > &c_output)	PhreeqcRM
GetCurrentSelectedOutputUserNumber(void)	PhreeqcRM
GetCurrentTime() override	BMIPhreeqcRM
GetDatabaseFileName(void)	PhreeqcRM	inline
GetDensity(std::vector< double > &d_output)	PhreeqcRM
GetDensityCalculated(std::vector< double > &d_output)	PhreeqcRM
GetEndCell(void)	PhreeqcRM	inline
GetEndTime() override	BMIPhreeqcRM
GetEquilibriumPhases(void) const	PhreeqcRM	inline
GetEquilibriumPhasesCount(void) const	PhreeqcRM	inline
GetErrorHandlerMode(void)	PhreeqcRM	inline
GetErrorString(void)	PhreeqcRM
GetExchangeNames(void) const	PhreeqcRM	inline
GetExchangeSpecies(void) const	PhreeqcRM	inline
GetExchangeSpeciesCount(void) const	PhreeqcRM	inline
GetFilePrefix(void)	PhreeqcRM	inline
GetForwardMapping(void)	PhreeqcRM	inline
GetGasCompMoles(std::vector< double > &gas_moles_output)	PhreeqcRM
GetGasComponents(void) const	PhreeqcRM	inline
GetGasComponentsCount(void) const	PhreeqcRM	inline
GetGasCompPhi(std::vector< double > &gas_phi)	PhreeqcRM
GetGasCompPressures(std::vector< double > &gas_pressure)	PhreeqcRM
GetGasPhaseVolume(std::vector< double > &gas_volume_output)	PhreeqcRM
GetGfw(void)	PhreeqcRM	inline
GetGridCellCount(void)	PhreeqcRM	inline
GetGridCellCountYAML(const char *YAML_file)	PhreeqcRM	static
GetGridEdgeCount(const int grid) override	BMIPhreeqcRM	inline
GetGridEdgeNodes(const int grid, int *edge_nodes) override	BMIPhreeqcRM	inline
GetGridFaceCount(const int grid) override	BMIPhreeqcRM	inline
GetGridFaceEdges(const int grid, int *face_edges) override	BMIPhreeqcRM	inline
GetGridFaceNodes(const int grid, int *face_nodes) override	BMIPhreeqcRM	inline
GetGridNodeCount(const int grid) override	BMIPhreeqcRM	inline
GetGridNodesPerFace(const int grid, int *nodes_per_face) override	BMIPhreeqcRM	inline
GetGridOrigin(const int grid, double *origin) override	BMIPhreeqcRM	inline
GetGridRank(const int grid) override	BMIPhreeqcRM
GetGridShape(const int grid, int *shape) override	BMIPhreeqcRM	inline
GetGridSize(const int grid) override	BMIPhreeqcRM
GetGridSpacing(const int grid, double *spacing) override	BMIPhreeqcRM	inline
GetGridType(const int grid) override	BMIPhreeqcRM
GetGridX(const int grid, double *x) override	BMIPhreeqcRM	inline
GetGridY(const int grid, double *y) override	BMIPhreeqcRM	inline
GetGridZ(const int grid, double *z) override	BMIPhreeqcRM	inline
GetIndex()	StaticIndexer< PhreeqcRM >	inline
GetInputItemCount() override	BMIPhreeqcRM
GetInputVarNames() override	BMIPhreeqcRM
GetInstance(int n)	BMIPhreeqcRM	static
GetIPhreeqcPointer(int i)	PhreeqcRM
GetIthConcentration(int i, std::vector< double > &c_output)	PhreeqcRM
GetIthSpeciesConcentration(int i, std::vector< double > &c_output)	PhreeqcRM
GetKineticReactions(void) const	PhreeqcRM	inline
GetKineticReactionsCount(void) const	PhreeqcRM	inline
GetMpiMyself(void) const	PhreeqcRM	inline
GetMpiTasks(void) const	PhreeqcRM	inline
GetNthSelectedOutputUserNumber(int n)	PhreeqcRM
GetOutputItemCount() override	BMIPhreeqcRM
GetOutputVarNames() override	BMIPhreeqcRM
GetPartitionUZSolids(void) const	PhreeqcRM	inline
GetPointableItemCount()	BMIPhreeqcRM
GetPointableVarNames()	BMIPhreeqcRM
GetPorosity(void)	PhreeqcRM
GetPressure(void)	PhreeqcRM
GetPrintChemistryMask(void)	PhreeqcRM	inline
GetPrintChemistryOn(void)	PhreeqcRM	inline
GetReadOnlyVarNames()	BMIPhreeqcRM
GetRebalanceByCell(void) const	PhreeqcRM	inline
GetRebalanceFraction(void) const	PhreeqcRM	inline
GetSaturation(std::vector< double > &sat_output)	PhreeqcRM
GetSaturationCalculated(std::vector< double > &sat_output)	PhreeqcRM
GetSelectedOutput(std::vector< double > &s_output)	PhreeqcRM
GetSelectedOutputColumnCount(void)	PhreeqcRM
GetSelectedOutputCount(void)	PhreeqcRM
GetSelectedOutputHeading(int icol, std::string &heading)	PhreeqcRM
GetSelectedOutputHeadings(std::vector< std::string > &headings)	PhreeqcRM
GetSelectedOutputOn(void)	PhreeqcRM	inline
GetSelectedOutputRowCount(void)	PhreeqcRM
GetSICount(void) const	PhreeqcRM	inline
GetSINames(void) const	PhreeqcRM	inline
GetSolidSolutionComponents(void) const	PhreeqcRM	inline
GetSolidSolutionComponentsCount(void) const	PhreeqcRM	inline
GetSolidSolutionNames(void) const	PhreeqcRM	inline
GetSolutionVolume(void)	PhreeqcRM
GetSpeciesConcentrations(std::vector< double > &species_conc_output)	PhreeqcRM
GetSpeciesCount(void)	PhreeqcRM	inline
GetSpeciesD25(void)	PhreeqcRM	inline
GetSpeciesLog10Gammas(std::vector< double > &species_log10gammas)	PhreeqcRM
GetSpeciesLog10Molalities(std::vector< double > &species_log10molalities)	PhreeqcRM
GetSpeciesNames(void)	PhreeqcRM	inline
GetSpeciesSaveOn(void)	PhreeqcRM	inline
GetSpeciesStoichiometry(void)	PhreeqcRM	inline
GetSpeciesZ(void)	PhreeqcRM	inline
GetStartCell(void)	PhreeqcRM	inline
GetStartTime() override	BMIPhreeqcRM
GetSurfaceNames(void) const	PhreeqcRM	inline
GetSurfaceSpecies(void) const	PhreeqcRM	inline
GetSurfaceSpeciesCount(void) const	PhreeqcRM	inline
GetSurfaceTypes(void) const	PhreeqcRM	inline
GetTemperature(void)	PhreeqcRM
GetThreadCount()	PhreeqcRM	inline
GetTime(void) const	PhreeqcRM	inline
GetTimeConversion(void)	PhreeqcRM	inline
GetTimeStep() override	BMIPhreeqcRM	inline
GetTimeUnits() override	BMIPhreeqcRM	inline
GetUnitsExchange(void)	PhreeqcRM	inline
GetUnitsGasPhase(void)	PhreeqcRM	inline
GetUnitsKinetics(void)	PhreeqcRM	inline
GetUnitsPPassemblage(void)	PhreeqcRM	inline
GetUnitsSolution(void)	PhreeqcRM	inline
GetUnitsSSassemblage(void)	PhreeqcRM	inline
GetUnitsSurface(void)	PhreeqcRM	inline
GetValue(const std::string name, void *dest) override	BMIPhreeqcRM
GetValue(const std::string name, bool &OUTPUT)	BMIPhreeqcRM
GetValue(const std::string name, bool *OUTPUT)	BMIPhreeqcRM
GetValue(const std::string name, double &OUTPUT)	BMIPhreeqcRM
GetValue(const std::string name, double *OUTPUT)	BMIPhreeqcRM
GetValue(const std::string name, int &OUTPUT)	BMIPhreeqcRM
GetValue(const std::string name, int *OUTPUT)	BMIPhreeqcRM
GetValue(const std::string name, std::string &OUTPUT)	BMIPhreeqcRM
GetValue(const std::string name, std::vector< double > &OUTPUT)	BMIPhreeqcRM
GetValue(const std::string name, std::vector< int > &OUTPUT)	BMIPhreeqcRM
GetValue(const std::string name, std::vector< std::string > &OUTPUT)	BMIPhreeqcRM
GetValueAtIndices(std::string name, void *dest, int *inds, int count) override	BMIPhreeqcRM	inline
GetValuePtr(std::string name) override	BMIPhreeqcRM
GetVarGrid(const std::string name) override	BMIPhreeqcRM	inline
GetVarItemsize(const std::string name) override	BMIPhreeqcRM
GetVarLocation(const std::string name) override	BMIPhreeqcRM	inline
GetVarNbytes(const std::string name) override	BMIPhreeqcRM
GetVarType(const std::string name) override	BMIPhreeqcRM
GetVarUnits(const std::string name) override	BMIPhreeqcRM
GetViscosity()	PhreeqcRM
GetWorkers()	PhreeqcRM	inline
InitialEquilibriumPhases2Module(const std::vector< int > &equilibrium_phases)	PhreeqcRM
InitialExchanges2Module(const std::vector< int > &exchanges)	PhreeqcRM
InitialGasPhases2Module(const std::vector< int > &gas_phases)	PhreeqcRM
Initialize(std::string config_file="") override	BMIPhreeqcRM
InitializeYAML(std::string yamlfile)	PhreeqcRM
InitialKinetics2Module(const std::vector< int > &kinetics)	PhreeqcRM
InitialPhreeqc2Concentrations(std::vector< double > &destination_c, const std::vector< int > &boundary_solution1)	PhreeqcRM
InitialPhreeqc2Concentrations(std::vector< double > &destination_c, const std::vector< int > &boundary_solution1, const std::vector< int > &boundary_solution2, const std::vector< double > &fraction1)	PhreeqcRM
InitialPhreeqc2Module(const std::vector< int > &initial_conditions1)	PhreeqcRM
InitialPhreeqc2Module(const std::vector< int > &initial_conditions1, const std::vector< int > &initial_conditions2, const std::vector< double > &fraction1)	PhreeqcRM
InitialPhreeqc2SpeciesConcentrations(std::vector< double > &destination_c, const std::vector< int > &boundary_solution1)	PhreeqcRM
InitialPhreeqc2SpeciesConcentrations(std::vector< double > &destination_c, const std::vector< int > &boundary_solution1, const std::vector< int > &boundary_solution2, const std::vector< double > &fraction1)	PhreeqcRM
InitialPhreeqcCell2Module(int n, const std::vector< int > &cell_numbers)	PhreeqcRM
InitialSolidSolutions2Module(const std::vector< int > &solid_solutions)	PhreeqcRM
InitialSolutions2Module(const std::vector< int > &solutions)	PhreeqcRM
InitialSurfaces2Module(const std::vector< int > &surfaces)	PhreeqcRM
Int2IrmResult(int r, bool positive_ok)	PhreeqcRM	static
language	BMIPhreeqcRM
LoadDatabase(const std::string &database)	PhreeqcRM
LogMessage(const std::string &str)	PhreeqcRM
MpiAbort()	PhreeqcRM
MpiWorker()	PhreeqcRM
MpiWorkerBreak()	PhreeqcRM
OpenFiles(void)	PhreeqcRM
OutputMessage(const std::string &str)	PhreeqcRM
PhreeqcRM(int nxyz, int thread_count_or_communicator, PHRQ_io *io=NULL, bool delay_construct=false)	PhreeqcRM
ReturnHandler(IRM_RESULT result, const std::string &e_string)	PhreeqcRM
RunCells(void)	PhreeqcRM
RunFile(bool workers, bool initial_phreeqc, bool utility, const std::string &chemistry_name)	PhreeqcRM
RunString(bool workers, bool initial_phreeqc, bool utility, const std::string &input_string)	PhreeqcRM
ScreenMessage(const std::string &str)	PhreeqcRM
SetComponentH2O(bool tf)	PhreeqcRM
SetConcentrations(const std::vector< double > &c)	PhreeqcRM
SetCurrentSelectedOutputUserNumber(int n_user)	PhreeqcRM
SetDensity(const std::vector< double > &density)	PhreeqcRM
SetDensityUser(const std::vector< double > &density)	PhreeqcRM
SetDumpFileName(const std::string &dump_name)	PhreeqcRM
SetErrorHandlerMode(int mode)	PhreeqcRM
SetErrorOn(bool tf)	PhreeqcRM
SetFilePrefix(const std::string &prefix)	PhreeqcRM
SetGasCompMoles(const std::vector< double > &gas_moles)	PhreeqcRM
SetGasPhaseVolume(const std::vector< double > &gas_volume)	PhreeqcRM
SetIthConcentration(int i, std::vector< double > &c)	PhreeqcRM
SetIthSpeciesConcentration(int i, std::vector< double > &c)	PhreeqcRM
SetLanguage(const char *string)	BMIPhreeqcRM	inline
SetMpiWorkerCallbackC(int(*fcn)(int *method, void *cookie))	PhreeqcRM
SetMpiWorkerCallbackCookie(void *cookie)	PhreeqcRM
SetMpiWorkerCallbackFortran(int(*fcn)(int *method))	PhreeqcRM
SetNthSelectedOutput(int n)	PhreeqcRM
SetPartitionUZSolids(bool tf)	PhreeqcRM
SetPorosity(const std::vector< double > &por)	PhreeqcRM
SetPressure(const std::vector< double > &p)	PhreeqcRM
SetPrintChemistryMask(const std::vector< int > &cell_mask)	PhreeqcRM
SetPrintChemistryOn(bool workers, bool initial_phreeqc, bool utility)	PhreeqcRM
SetRebalanceByCell(bool tf)	PhreeqcRM
SetRebalanceFraction(double f)	PhreeqcRM
SetRepresentativeVolume(const std::vector< double > &rv)	PhreeqcRM
SetSaturation(const std::vector< double > &sat)	PhreeqcRM
SetSaturationUser(const std::vector< double > &sat)	PhreeqcRM
SetScreenOn(bool tf)	PhreeqcRM
SetSelectedOutputOn(bool tf)	PhreeqcRM
SetSpeciesSaveOn(bool save_on)	PhreeqcRM
SetTemperature(const std::vector< double > &t)	PhreeqcRM
SetTime(double time)	PhreeqcRM
SetTimeConversion(double conv_factor)	PhreeqcRM
SetTimeStep(double time_step)	PhreeqcRM
SetUnitsExchange(int option)	PhreeqcRM
SetUnitsGasPhase(int option)	PhreeqcRM
SetUnitsKinetics(int option)	PhreeqcRM
SetUnitsPPassemblage(int option)	PhreeqcRM
SetUnitsSolution(int option)	PhreeqcRM
SetUnitsSSassemblage(int option)	PhreeqcRM
SetUnitsSurface(int option)	PhreeqcRM
SetValue(const std::string name, void *src) override	BMIPhreeqcRM
SetValue(const std::string name, bool src)	BMIPhreeqcRM
SetValue(const std::string name, const char *src)	BMIPhreeqcRM
SetValue(const std::string name, double src)	BMIPhreeqcRM
SetValue(const std::string name, int src)	BMIPhreeqcRM
SetValue(const std::string name, const std::string src)	BMIPhreeqcRM
SetValue(const std::string name, std::vector< double > src)	BMIPhreeqcRM
SetValue(const std::string name, std::vector< int > src)	BMIPhreeqcRM
SetValue(const std::string name, std::vector< std::string > src)	BMIPhreeqcRM
SetValueAtIndices(std::string name, int *inds, int count, void *src) override	BMIPhreeqcRM	inline
SpeciesConcentrations2Module(const std::vector< double > &species_conc)	PhreeqcRM
StateApply(int istate)	PhreeqcRM
StateDelete(int istate)	PhreeqcRM
StateSave(int istate)	PhreeqcRM
StaticIndexer(PhreeqcRM *self)	StaticIndexer< PhreeqcRM >	inline
Update() override	BMIPhreeqcRM
UpdateUntil(double end_time) override	BMIPhreeqcRM
UseSolutionDensityVolume(bool tf)	PhreeqcRM
WarningMessage(const std::string &warnstr)	PhreeqcRM
~BMIPhreeqcRM() override	BMIPhreeqcRM
~PhreeqcRM(void)	PhreeqcRM	virtual
~StaticIndexer()	StaticIndexer< PhreeqcRM >	inline